Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs6066815 chr20:47299870 T/C 3.82E-9 499 31.7 32.03 18.22 KM Plot
THCA rs6066819 chr20:47317989 T/C 3.67E-9 502 31.53 32.03 18.22 KM Plot
THCA rs6066820 chr20:47318444 T/C 3.97E-9 502 31.53 32.03 18.22 KM Plot
THCA rs6066828 chr20:47344233 C/T 8.62E-9 501 31.47 32.5 18.22 KM Plot
THCA rs6066829 chr20:47351630 G/T 1.43E-8 503 5.8 32.9 31.47 KM Plot
THCA rs6066830 chr20:47353897 C/T 8.06E-9 503 31.47 32.9 18.22 KM Plot
THCA rs6066831 chr20:47354131 C/A 8.06E-9 503 31.47 32.9 18.22 KM Plot
THCA rs6066832 chr20:47354132 C/A 8.06E-9 503 31.47 32.9 18.22 KM Plot
THCA rs6066833 chr20:47354494 G/C 8.06E-9 503 31.47 32.9 18.22 KM Plot
THCA rs6066835 chr20:47355009 A/G 8.97E-9 503 31.47 32.9 18.22 KM Plot
THCA rs6066837 chr20:47357337 A/C 0 499 31.47 33.63 5.8 KM Plot
THCA rs60880076 chr9:16877259 A/T 0.000152 494 31.47 31.53 27.38 KM Plot
THCA rs60882897 chr7:32799211 TC/T 9.18E-5 500 31.45 31.67 32.1 KM Plot
THCA rs6089808 chr20:61494917 A/C 3.79E-5 483 31.03 36.17 40.73 KM Plot
THCA rs6090147 chr20:61494915 C/A 3.79E-5 483 31.03 36.17 40.73 KM Plot